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Generalizable conservation mapping pipeline for RNA viruses

๐Ÿ“… Started 2026๐Ÿ”— GitHub Repository

Project Overview

A five-phase bioinformatics pipeline analyzing sequence conservation and vaccine/drug target viability across RNA viruses: Rotavirus โ†’ Rhinovirus โ†’ SARS-CoV-2 โ†’ Influenza โ†’ HIV. Built on MAFFT multiple sequence alignment with custom conservation scoring. Phase I (Rotavirus) complete; rotavirus genotype P[6] identified as primary vaccine gap driver with VP5* as high-value conserved target.